docId=14592973 label=1.0,0.0 duid=RL:jb49

dependency ['nmod', 'nsubj', 'root', 'mark', 'nsubj', 'case', 'nmod', 'case', 'nmod', 'cop', 'ccomp', 'case', 'det', 'amod', 'compound', 'NA', 'nummod', 'NA', 'compound', 'nmod', 'case', 'compound', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylation', 'ENTITY']
shortest_path_tag ['nmod', 'nsubj', 'nmod']
lexical []

words	Our	results	indicate	that	phosphorylation	of	ENTITY	by	ENTITY	is	important	for	the	meiotic	G	(	2	)	/M	progression	of	Xenopus	oocytes	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=18044967 label=0.0,1.0 duid=RL:P259

dependency ['nsubj', 'cc', 'conj', 'dep', 'root', 'dobj', 'NA', 'cc', 'nsubj', 'case', 'nmod', 'case', 'amod', 'nmod', 'conj', 'det', 'dobj', 'case', 'compound', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylate', 'diminishes', 'level', 'phosphorylation', 'ENTITY']
shortest_path_tag ['conj', 'root', 'conj', 'dobj', 'nmod', 'compound']
lexical []

words	c-Src	and	ENTITY	both	phosphorylate	syntrophin	,	and	inhibition	of	either	with	specific	siRNAs	diminishes	the	level	of	ENTITY	phosphorylation	.
is_protein	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0
is_kinase	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0

docId=9670957 label=1.0,1.0 duid=RL:pHz3

dependency ['case', 'nmod', 'case', 'compound', 'nmod', 'NA', 'nsubj', 'root', 'dobj', 'case', 'det', 'compound', 'nmod', 'cc', 'conj', 'compound', 'compound', 'dobj', 'case', 'det', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylates', 'ENTITY']
shortest_path_tag ['nsubj', 'root', 'dobj']
lexical []

words	Within	seconds	of	MCP-1	activation	,	ENTITY	phosphorylates	ENTITY	at	the	ENTITY	position	and	promotes	JAK2/STAT3	complex	association	to	the	receptor	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=19144687 label=1.0,1.0 duid=RL:fHmX

dependency ['advmod', 'advcl', 'case', 'compound', 'compound', 'nmod', 'NA', 'nsubj', 'case', 'compound', 'nmod', 'case', 'nmod', 'NA', 'appos', 'NA', 'root', 'amod', 'compound', 'dobj', 'advmod', 'case', 'mwe', 'amod', 'NA', 'dep', 'NA', 'amod', 'advcl', 'NA']
shortest_path_text ['ENTITY', 'phosphorylation', 'prevention', 'ENTITYENTITY']
shortest_path_tag ['compound', 'nmod', 'nsubj', 'nmod']
lexical []

words	When	expressed	in	Xenopus	laevis	oocytes	,	prevention	of	ENTITY	phosphorylation	at	ENTITYENTITY	(	S256A-AQP2	)	reduced	osmotic	water	permeability	threefold	compared	with	wild-type	(	WT	)	AQP2-injected	oocytes	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=12003815 label=1.0,0.0 duid=RL:5XkW

dependency ['det', 'nsubj', 'root', 'mark', 'det', 'nsubj', 'case', 'nmod', 'case', 'nmod', 'ccomp', 'det', 'dobj', 'cc', 'aux', 'cop', 'det', 'amod', 'ccomp', 'acl', 'case', 'det', 'amod', 'nmod', 'case', 'compound', 'nmod', 'case', 'amod', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylation', 'ENTITY']
shortest_path_tag ['nmod', 'nsubj', 'nmod']
lexical []

words	These	results	suggest	that	the	phosphorylation	of	ENTITY	by	ENTITY	activates	the	enzyme	and	may	be	the	first	step	leading	to	an	initial	increase	in	NO	production	in	portal	hypertension	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=24949568 label=1.0,1.0 duid=RL:jtcv

dependency ['nsubj', 'cc', 'amod', 'conj', 'case', 'amod', 'nmod', 'root', 'compound', 'dobj', 'case', 'amod', 'compound', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'ENTITY']
shortest_path_tag ['nsubj', 'nmod']
lexical []

words	ENTITY	-	dependent	phosphorylation	of	cardiac	ENTITY	regulates	cell	death	in	cardiac	ischemia/reperfusion	injury	.
is_protein	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=24949568 label=0.0,1.0 duid=RL:zecu

dependency ['case', 'compound', 'nmod', 'acl', 'case', 'amod', 'nmod', 'NA', 'appos', 'NA', 'NA', 'nsubj', 'case', 'det', 'amod', 'compound', 'nmod', 'NA', 'appos', 'case', 'amod', 'nmod', 'cc', 'case', 'nmod', 'case', 'nmod', 'NA', 'advmod', 'root', 'case', 'det', 'nmod', 'case', 'nmod', 'mark', 'amod', 'nsubj', 'case', 'nmod', 'cc', 'nmod', 'aux', 'neg', 'advcl', 'NA']
shortest_path_text ['ENTITY', 'sites', 'phosphorylation', 'increased', 'change', 'phosphorylation', 'ENTITY']
shortest_path_tag ['compound', 'nmod', 'nsubj', 'root', 'advcl', 'nsubj', 'nmod']
lexical []

words	In	mouse	hearts	subjected	to	global	I/R	(	45/120min	)	,	phosphorylation	of	the	primary	ENTITY	sites	,	ENTITY	on	cardiac	ENTITY	and	of	T17	on	PLN	,	significantly	increased	at	the	onset	of	reperfusion	whereas	PKA-dependent	phosphorylation	of	ENTITY	and	ENTITY	did	not	change	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0

docId=24949568 label=1.0,1.0 duid=RL:23XQ

dependency ['case', 'compound', 'nmod', 'acl', 'case', 'amod', 'nmod', 'NA', 'appos', 'NA', 'NA', 'nsubj', 'case', 'det', 'amod', 'compound', 'nmod', 'NA', 'appos', 'case', 'amod', 'nmod', 'cc', 'case', 'nmod', 'case', 'nmod', 'NA', 'advmod', 'root', 'case', 'det', 'nmod', 'case', 'nmod', 'mark', 'amod', 'nsubj', 'case', 'nmod', 'cc', 'nmod', 'aux', 'neg', 'advcl', 'NA']
shortest_path_text ['ENTITY', 'sites', 'ENTITY', 'ENTITY']
shortest_path_tag ['compound', 'nmod', 'appos', 'nmod']
lexical []

words	In	mouse	hearts	subjected	to	global	I/R	(	45/120min	)	,	phosphorylation	of	the	primary	ENTITY	sites	,	ENTITY	on	cardiac	ENTITY	and	of	T17	on	PLN	,	significantly	increased	at	the	onset	of	reperfusion	whereas	PKA-dependent	phosphorylation	of	ENTITY	and	ENTITY	did	not	change	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=18269917 label=1.0,1.0 duid=RL:e8xW

dependency ['compound', 'nsubj', 'root', 'dobj', 'case', 'det', 'amod', 'compound', 'nmod', 'acl', 'dobj', 'case', 'nmod', 'NA', 'nmod', 'cc', 'nmod', 'NA', 'cc', 'cc', 'nmod', 'NA', 'case', 'det', 'amod', 'compound', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'revealed', 'kinase', 'mediating', 'phosphorylation', 'ENTITY']
shortest_path_tag ['dobj', 'root', 'nmod', 'acl', 'dobj', 'nmod']
lexical []

words	Inhibitor	treatments	revealed	ENTITY	as	the	major	protein	kinase	mediating	phosphorylation	of	ENTITY	,	ENTITY	and	ENTITY	,	but	not	Cen3p	,	at	a	specific	target	sequence	.
is_protein	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=9405465 label=0.0,0.0 duid=RL:t7Gj

dependency ['det', 'nsubj', 'root', 'dobj', 'case', 'compound', 'nmod', 'case', 'det', 'nmod', 'cc', 'conj', 'nsubjpass', 'auxpass', 'advmod', 'ccomp', 'case', 'nmod', 'NA', 'nmod', 'NA', 'cc', 'nmod', 'compound', 'advmod', 'NA']
shortest_path_text ['multiply', 'phosphorylated', 'demonstrate', 'identify', 'site', 'phosphorylation']
shortest_path_tag ['advmod', 'ccomp', 'conj', 'root', 'dobj', 'nmod']
lexical []

words	These	results	identify	site	of	ENTITY	phosphorylation	of	the	ENTITY	and	demonstrate	ENTITY	is	multiply	phosphorylated	by	ENTITY	,	ENTITY	,	and	ENTITY	in	situ	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=19969058 label=1.0,1.0 duid=RL:jKBd

dependency ['nsubj', 'root', 'dobj', 'cc', 'nsubj', 'aux', 'neg', 'conj', 'NA']
shortest_path_text ['ENTITY', 'phosphorylated', 'change', 'ENTITY']
shortest_path_tag ['nsubj', 'root', 'conj', 'nsubj']
lexical []

words	ENTITY	phosphorylated	ENTITY	and	ENTITY	did	not	change	.
is_protein	1.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0
is_kinase	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	1.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0

docId=16733521 label=1.0,1.0 duid=RL:ioWw

dependency ['nsubj', 'root', 'det', 'dobj', 'cc', 'det', 'nsubjpass', 'auxpass', 'conj', 'case', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylates', 'ENTITY']
shortest_path_tag ['nsubj', 'root', 'dobj']
lexical []

words	ENTITY	phosphorylates	the	ENTITY	and	this	phosphorylation	is	decreased	by	Li+	.
is_protein	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=16289965 label=1.0,1.0 duid=RL:BpMe

dependency ['nsubj', 'advmod', 'root', 'dobj', 'NA', 'det', 'amod', 'appos', 'case', 'nmod', 'NA', 'cc', 'det', 'nsubj', 'conj', 'case', 'nmod', 'case', 'nmod', 'case', 'amod', 'nmod', 'case', 'det', 'amod', 'nmod', 'case', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylates', 'ENTITY']
shortest_path_tag ['nsubj', 'root', 'dobj']
lexical []

words	ENTITY	directly	phosphorylates	ENTITY	,	another	key	component	of	NMD	,	and	this	phosphorylation	occurs	upon	recognition	of	PTC	on	post-spliced	mRNA	during	the	initial	round	of	translation	.
is_protein	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=29395339 label=1.0,0.0 duid=RL:MR7Z

dependency ['nsubj', 'root', 'nsubj', 'cc', 'conj', 'ccomp', 'cc', 'ccomp', 'compound', 'dobj', 'case', 'nmod', 'case', 'amod', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'promote', 'phosphorylation', 'ENTITY']
shortest_path_tag ['nmod', 'ccomp', 'dobj', 'compound']
lexical []

words	We	found	INV	and	NPHP3	cooperate	and	promote	ENTITY	phosphorylation	by	ENTITY	in	renal	cilia	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0

docId=16904979 label=0.0,1.0 duid=RL:B8e3

dependency ['root', 'NA', 'compound', 'compound', 'compound', 'nsubj', 'nummod', 'appos', 'compound', 'compound', 'compound', 'amod', 'compound', 'compound', 'NA', 'dobj', 'NA', 'cc', 'compound', 'dobj', 'ref', 'advmod', 'acl', 'dobj', 'NA']
shortest_path_text ['ENTITY', 'kinases', 'phosphorylate', 'ENTITY']
shortest_path_tag ['compound', 'dobj', 'acl', 'dobj']
lexical []

words	BACKGROUND	:	Tumor	necrosis	factor	receptor	I	recruits	tumor	necrosis	factor	receptor-associated	death	domain	(	TRADD	)	and	ENTITY	kinases	that	ultimately	phosphorylate	ENTITY	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0

docId=12959979 label=0.0,1.0 duid=RL:YQpv

dependency ['det', 'nsubj', 'root', 'mark', 'case', 'nmod', 'dep', 'NA', 'compound', 'nsubj', 'case', 'nmod', 'ccomp', 'case', 'compound', 'compound', 'compound', 'nummod', 'amod', 'compound', 'nmod', 'NA', 'advmod', 'case', 'det', 'nmod', 'case', 'nmod', 'NA', 'dep', 'NA', 'case', 'det', 'amod', 'nmod', 'NA', 'compound', 'nsubjpass', 'auxpass', 'advmod', 'dep', 'case', 'nmod', 'cc', 'cop', 'dep', 'case', 'compound', 'nmod', 'NA', 'dep', 'NA', 'advmod', 'NA', 'mark', 'nsubj', 'cop', 'advcl', 'case', 'cc', 'amod', 'cc', 'conj', 'nmod', 'case', 'nmod', 'NA', 'nsubjpass', 'auxpass', 'advmod', 'neg', 'dep', 'case', 'compound', 'nmod', 'case', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylation', 'ENTITY']
shortest_path_tag ['compound', 'nmod', 'nmod']
lexical []

words	These	results	suggest	that	in	osteoclasts	1	)	ENTITY	phosphorylation	of	ENTITY	depends	on	alpha	v	beta	3	integrin-mediated	cell	adhesion	,	even	in	the	presence	of	M-CSF	;	2	)	on	the	other	hand	,	ENTITY	phosphorylation	is	predominantly	activated	by	ENTITY	and	is	independent	of	cell	adhesion	;	3	)	lastly	,	although	c-Src	is	essential	for	both	adhesion-	and	M-CSF-mediated	phosphorylation	of	ENTITY	,	it	is	clearly	not	required	for	ENTITY	phosphorylation	in	ENTITY	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	1.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	1.0	0.0

docId=12959979 label=0.0,1.0 duid=RL:uYp4

dependency ['det', 'nsubj', 'root', 'mark', 'case', 'nmod', 'dep', 'NA', 'compound', 'nsubj', 'case', 'nmod', 'ccomp', 'case', 'compound', 'compound', 'compound', 'nummod', 'amod', 'compound', 'nmod', 'NA', 'advmod', 'case', 'det', 'nmod', 'case', 'nmod', 'NA', 'dep', 'NA', 'case', 'det', 'amod', 'nmod', 'NA', 'compound', 'nsubjpass', 'auxpass', 'advmod', 'dep', 'case', 'nmod', 'cc', 'cop', 'dep', 'case', 'compound', 'nmod', 'NA', 'dep', 'NA', 'advmod', 'NA', 'mark', 'nsubj', 'cop', 'advcl', 'case', 'cc', 'amod', 'cc', 'conj', 'nmod', 'case', 'nmod', 'NA', 'nsubjpass', 'auxpass', 'advmod', 'neg', 'dep', 'case', 'compound', 'nmod', 'case', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylation', 'independent', 'depends', 'required', 'essential', 'phosphorylation', 'ENTITY']
shortest_path_tag ['compound', 'nsubjpass', 'dep', 'ccomp', 'dep', 'advcl', 'nmod', 'nmod']
lexical []

words	These	results	suggest	that	in	osteoclasts	1	)	ENTITY	phosphorylation	of	ENTITY	depends	on	alpha	v	beta	3	integrin-mediated	cell	adhesion	,	even	in	the	presence	of	M-CSF	;	2	)	on	the	other	hand	,	ENTITY	phosphorylation	is	predominantly	activated	by	ENTITY	and	is	independent	of	cell	adhesion	;	3	)	lastly	,	although	c-Src	is	essential	for	both	adhesion-	and	M-CSF-mediated	phosphorylation	of	ENTITY	,	it	is	clearly	not	required	for	ENTITY	phosphorylation	in	ENTITY	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=19096775 label=1.0,1.0 duid=RL:LYJ5

dependency ['det', 'amod', 'nsubj', 'case', 'nmod', 'root', 'dobj', 'NA', 'ref', 'case', 'nmod', 'acl', 'dobj', 'NA', 'cc', 'advmod', 'conj', 'det', 'dobj', 'case', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylates', 'ENTITY']
shortest_path_tag ['dobj', 'acl', 'dobj']
lexical []

words	The	AVP-induced	rise	in	cAMP	activates	ENTITY	,	which	in	turn	phosphorylates	ENTITY	,	and	thereby	triggers	the	redistribution	of	AQP2	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=10866685 label=0.0,0.0 duid=RL:7jfH

dependency ['nsubj', 'cop', 'advmod', 'root', 'case', 'det', 'amod', 'nmod', 'case', 'compound', 'nmod', 'acl', 'case', 'det', 'nmod', 'case', 'compound', 'nmod', 'case', 'compound', 'nmod', 'case', 'nmod', 'NA']
shortest_path_text ['increase', 'caused', 'level', 'due', 'likely']
shortest_path_tag ['nmod', 'acl', 'nmod', 'root', 'advmod']
lexical []

words	This	is	likely	due	to	a	decreased	level	of	ENTITY	phosphorylation	caused	by	an	increase	in	PP2A	activity	following	ENTITY	phosphorylation	of	ENTITY	.
is_protein	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=24378532 label=1.0,0.0 duid=RL:2qra

dependency ['case', 'nmod', 'cc', 'compound', 'compound', 'conj', 'nsubj', 'aux', 'root', 'dobj', 'case', 'nmod', 'case', 'det', 'nmod', 'acl', 'case', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylated', 'site', 'identified', 'ENTITY', 'ENTITY']
shortest_path_tag ['nmod', 'acl', 'nmod', 'root', 'dobj', 'nmod']
lexical []

words	Through	deletion	and	base	substitution	mutagenesis	we	have	identified	ENTITY	of	ENTITY	as	the	site	phosphorylated	by	ENTITY	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0

docId=19556869 label=1.0,0.0 duid=RL:aQCB

dependency ['nsubj', 'case', 'nmod', 'mark', 'nsubj', 'dep', 'dobj', 'case', 'compound', 'compound', 'nmod', 'case', 'nmod', 'root', 'det', 'dobj', 'case', 'amod', 'nmod', 'NA', 'case', 'compound', 'nmod', 'cc', 'compound', 'nmod', 'nummod', 'NA', 'appos', 'NA', 'NA']
shortest_path_text ['ENTITY', 'enhances', 'Phosphorylation', 'ENTITY']
shortest_path_tag ['nsubj', 'dep', 'nsubj', 'nmod']
lexical []

words	Phosphorylation	of	ENTITY	by	ENTITY	enhances	activation	of	Aurora	A.	Entry	into	mitosis	requires	the	activation	of	mitotic	kinases	,	including	Aurora	A	and	Polo-like	kinase	1	(	Plk1	)	.
is_protein	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=10518114 label=1.0,0.0 duid=RL:TmwU

dependency ['advmod', 'NA', 'nsubj', 'root', 'amod', 'dobj', 'case', 'amod', 'nmod', 'case', 'nmod', 'case', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'enhanced', 'phosphorylation', 'protein', 'ENTITY']
shortest_path_tag ['nmod', 'root', 'dobj', 'nmod', 'nmod']
lexical []

words	Besides	,	propofol	enhanced	GABA-dependent	phosphorylation	of	growth-associated	protein	of	ENTITY	by	ENTITY	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0

docId=16920624 label=1.0,1.0 duid=RL:uNZi

dependency ['compound', 'nsubj', 'case', 'det', 'compound', 'compound', 'nmod', 'root', 'amod', 'compound', 'dobj', 'NA']
shortest_path_text ['ENTITY', 'phosphorylation', 'ENTITY']
shortest_path_tag ['compound', 'nsubj', 'nmod']
lexical []

words	ENTITY	phosphorylation	of	the	fission	yeast	ENTITY	ensures	accurate	chromosome	segregation	.
is_protein	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0
is_kinase	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0

docId=16920624 label=1.0,1.0 duid=RL:hsCs

dependency ['nsubj', 'NA', 'appos', 'NA', 'root', 'dep', 'dobj', 'cc', 'amod', 'dobj', 'case', 'nmod', 'NA', 'mark', 'nsubj', 'NA', 'nummod', 'NA', 'aux', 'advmod', 'advcl', 'det', 'dobj', 'acl', 'case', 'nmod', 'case', 'nmod', 'NA', 'det', 'amod', 'appos', 'NA']
shortest_path_text ['ENTITY', 'ENTITY']
shortest_path_tag ['dobj', 'nmod']
lexical []

words	Dis1	(	6E	)	mimics	the	ENTITY	-	phosphorylated	form	of	ENTITY	,	whereas	Dis1	(	6A	)	can	partially	rescue	the	phenotype	resulting	form	deletion	of	Mtc1/Alp14	,	another	XMAP215-like	protein	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=16920624 label=1.0,1.0 duid=RL:WGhK

dependency ['nsubj', 'advmod', 'advmod', 'root', 'dobj', 'NA', 'cc', 'det', 'nsubj', 'conj', 'compound', 'dobj', 'case', 'cc', 'nmod', 'cc', 'nmod', 'cc', 'conj', 'compound', 'dobj', 'NA']
shortest_path_text ['ENTITY', 'phosphorylates', 'ENTITY']
shortest_path_tag ['nsubj', 'root', 'dobj']
lexical []

words	ENTITY	thus	directly	phosphorylates	ENTITY	,	and	this	phosphorylation	regulates	ENTITY	localization	in	both	metaphase	and	anaphase	and	ensures	high-fidelity	segregation	.
is_protein	1.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	1.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=12110689 label=1.0,1.0 duid=RL:XaNz

dependency ['advmod', 'NA', 'det', 'amod', 'compound', 'compound', 'nsubj', 'NA', 'appos', 'NA', 'advmod', 'root', 'cc', 'dobj', 'cc', 'amod', 'compound', 'dobj', 'cc', 'compound', 'compound', 'conj', 'NA', 'advcl', 'mark', 'det', 'nsubj', 'ccomp', 'det', 'compound', 'dobj', 'NA']
shortest_path_text ['ENTITY', 'phosphorylation', 'ENTITY']
shortest_path_tag ['dobj', 'dobj', 'compound']
lexical []

words	Furthermore	,	a	specific	ERK1/2	phosphorylation	inhibitor	,	U0126	,	completely	blocked	both	ENTITY	-	stimulated	ENTITY	phosphorylation	and	osteocalcin	promoter	activity	,	indicating	that	this	regulation	requires	the	MAPK	pathway	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=12110689 label=1.0,0.0 duid=RL:rhrE

dependency ['det', 'nsubj', 'cop', 'det', 'amod', 'root', 'mark', 'nsubjpass', 'auxpass', 'ccomp', 'cc', 'ccomp', 'case', 'nmod', 'case', 'det', 'compound', 'nmod', 'cc', 'ccomp', 'mark', 'nsubj', 'ccomp', 'det', 'amod', 'dobj', 'case', 'nmod', 'case', 'compound', 'nmod', 'cc', 'compound', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'activated', 'ENTITY']
shortest_path_tag ['nmod', 'ccomp', 'nsubjpass']
lexical []

words	This	study	is	the	first	demonstration	that	ENTITY	is	phosphorylated	and	activated	by	ENTITY	via	the	MAPK	pathway	and	suggests	that	FGF-2	plays	an	important	role	in	regulation	of	Runx2	function	and	bone	formation	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=28689659 label=1.0,0.0 duid=RL:sHJn

dependency ['compound', 'nsubjpass', 'case', 'nmod', 'NA', 'nmod', 'NA', 'cc', 'nmod', 'auxpass', 'root', 'case', 'nmod', 'amod', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'Phosphorylation', 'ENTITY']
shortest_path_tag ['nmod', 'nsubjpass', 'compound']
lexical []

words	ENTITY	Phosphorylation	by	ENTITY	,	ENTITY	,	and	ENTITY	Is	Required	for	Its	Transcriptional	Activity	.
is_protein	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=28689659 label=1.0,1.0 duid=RL:UpGJ

dependency ['advmod', 'nsubj', 'root', 'mark', 'nsubj', 'NA', 'conj', 'NA', 'cc', 'conj', 'ccomp', 'dobj', 'NA']
shortest_path_text ['\xc2\xa0ENTITY', 'phosphorylate', 'ENTITY']
shortest_path_tag ['conj', 'ccomp', 'dobj']
lexical []

words	Here	we	show	that	ENTITY	,	ENTITY	,	and	ENTITY	phosphorylate	ENTITY	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0

docId=28689659 label=0.0,1.0 duid=RL:fubE

dependency ['nsubj', 'case', 'nmod', 'case', 'nmod', 'root', 'dobj', 'case', 'compound', 'nmod', 'case', 'compound', 'nmod', 'cc', 'advmod', 'conj', 'amod', 'dobj', 'cc', 'dobj', 'case', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'Phosphorylation', 'promotes', 'stabilization', 'ENTITY']
shortest_path_tag ['nmod', 'nsubj', 'conj', 'dobj', 'nmod']
lexical []

words	Phosphorylation	of	ENTITY	by	ENTITY	induces	switching	of	K48	ubiquitination	to	K63	ubiquitination	and	thus	promotes	nuclear	localization	and	stabilization	of	ENTITY	.
is_protein	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0
is_kinase	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0

docId=17417029 label=1.0,0.0 duid=RL:77mA

dependency ['case', 'det', 'nmod', 'case', 'det', 'nmod', 'NA', 'advmod', 'nsubj', 'root', 'det', 'dobj', 'acl', 'mark', 'xcomp', 'det', 'dobj', 'case', 'det', 'nmod', 'case', 'nmod', 'NA', 'ref', 'auxpass', 'acl', 'cc', 'acl', 'case', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylation', 'ENTITY']
shortest_path_tag ['nmod', 'dobj', 'nmod']
lexical []

words	As	an	example	of	the	technique	,	here	we	describe	an	assay	aimed	to	test	the	phosphorylation	of	the	ENTITY	by	ENTITY	,	which	is	overexpressed	and	purified	from	Neurospora	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=15294900 label=0.0,1.0 duid=RL:QUqj

dependency ['compound', 'nsubj', 'root', 'amod', 'amod', 'compound', 'dobj', 'cc', 'dobj', 'case', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'transcription', 'phosphorylation', 'ENTITY']
shortest_path_tag ['compound', 'dobj', 'dobj', 'nmod']
lexical []

words	TGF-beta	treatment	induced	simultaneous	Smad-mediated	ENTITY	transcription	and	phosphorylation	of	ENTITY	.
is_protein	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0

docId=9447971 label=1.0,1.0 duid=RL:QKBR

dependency ['advmod', 'NA', 'compound', 'nsubj', 'cop', 'root', 'mark', 'xcomp', 'dobj', 'case', 'det', 'nmod', 'case', 'amod', 'nmod', 'case', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylate', 'ENTITY']
shortest_path_tag ['nsubj', 'xcomp', 'dobj']
lexical []

words	Furthermore	,	cyclin	ENTITY	is	unable	to	phosphorylate	ENTITY	in	the	absence	of	prior	phosphorylation	by	ENTITY	.
is_protein	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=18184930 label=1.0,1.0 duid=RL:fonM

dependency ['nsubj', 'root', 'compound', 'dobj', 'mark', 'advcl', 'dobj', 'NA']
shortest_path_text ['ENTITY', 'regulates', 'phosphorylating', 'ENTITY']
shortest_path_tag ['nsubj', 'root', 'advcl', 'dobj']
lexical []

words	ENTITY	regulates	GLUT4	transcription	by	phosphorylating	ENTITY	.
is_protein	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0
is_kinase	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0

docId=29845509 label=1.0,0.0 duid=RL:T2dj

dependency ['det', 'nsubj', 'root', 'mark', 'nsubj', 'ccomp', 'compound', 'dobj', 'case', 'compound', 'nmod', 'case', 'nmod', 'case', 'nmod', 'case', 'amod', 'amod', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'activation', 'induces', 'phosphorylation', 'ENTITY']
shortest_path_tag ['nmod', 'nmod', 'ccomp', 'nmod', 'compound']
lexical []

words	These	findings	suggest	that	GLP-1	induces	amylase	release	through	ENTITY	phosphorylation	via	activation	of	ENTITY	in	isolated	pancreatic	acini	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0

docId=18973552 label=1.0,0.0 duid=RL:Ypvc

dependency ['nsubj', 'case', 'det', 'nmod', 'case', 'nmod', 'root', 'det', 'amod', 'dobj', 'case', 'det', 'nmod', 'case', 'amod', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'Phosphorylation', 'ENTITY']
shortest_path_tag ['nmod', 'nsubj', 'nmod']
lexical []

words	Phosphorylation	of	the	ENTITY	by	ENTITY	plays	an	important	role	in	the	development	of	chronic	pain	.
is_protein	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=15471980 label=1.0,1.0 duid=RL:9yFf

dependency ['compound', 'nsubj', 'root', 'compound', 'dobj', 'cc', 'dobj', 'case', 'nmod', 'mark', 'advcl', 'compound', 'dobj', 'NA']
shortest_path_text ['ENTITY', 'phosphorylation', 'ENTITY']
shortest_path_tag ['compound', 'dobj', 'nmod']
lexical []

words	Integrin	mechanotransduction	stimulates	ENTITY	phosphorylation	and	recruitment	of	ENTITY	to	mediate	actin	reorganization	.
is_protein	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0

docId=18326489 label=1.0,0.0 duid=RL:vRUY

dependency ['advmod', 'NA', 'compound', 'nsubj', 'case', 'nmod', 'root', 'case', 'det', 'amod', 'cc', 'conj', 'nmod', 'case', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylation', 'ENTITY']
shortest_path_tag ['nmod', 'nsubj', 'compound']
lexical []

words	Second	,	ENTITY	phosphorylation	by	ENTITY	interferes	with	the	microtubule-binding	and	polymerizing	activities	of	ENTITY	.
is_protein	0.0	0.0	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=22917493 label=1.0,1.0 duid=RL:sSoJ

dependency ['amod', 'root', 'NA', 'ref', 'acl', 'dobj', 'cc', 'acl', 'dobj', 'NA']
shortest_path_text ['ENTITY', 'phosphorylates', 'ENTITY']
shortest_path_tag ['root', 'acl', 'dobj']
lexical []

words	Viral	ENTITY	,	which	phosphorylates	ENTITY	and	inhibits	translation	.
is_protein	0.0	1.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0
is_kinase	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	1.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0

docId=28123016 label=1.0,0.0 duid=RL:wjqp

dependency ['nsubj', 'root', 'det', 'amod', 'dep', 'dobj', 'case', 'nmod', 'cc', 'nmod', 'compound', 'nmod', 'case', 'amod', 'nmod', 'cc', 'compound', 'nmod', 'case', 'amod', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylation', 'ENTITY']
shortest_path_tag ['compound', 'nmod', 'nmod']
lexical []

words	We	describe	an	in	vivo	role	for	ENTITY	and	its	ENTITY	phosphorylation	during	neuronal	migration	and	process	formation	in	embryonic	brains	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=30135087 label=1.0,1.0 duid=RL:SQhT

dependency ['det', 'nsubj', 'root', 'det', 'dobj', 'case', 'ref', 'nsubj', 'acl', 'dobj', 'case', 'nmod', 'amod', 'amod', 'nmod', 'NA', 'appos', 'advmod', 'NA', 'det', 'nsubjpass', 'auxpass', 'parataxis', 'case', 'det', 'advmod', 'amod', 'compound', 'nmod', 'case', 'det', 'compound', 'nmod', 'case', 'nmod', 'NA', 'advmod', 'acl', 'mark', 'auxpass', 'xcomp', 'case', 'amod', 'amod', 'nmod', 'case', 'nmod', 'NA', 'case', 'det', 'amod', 'nmod', 'case', 'compound', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylates', 'ENTITY']
shortest_path_tag ['nsubj', 'acl', 'dobj']
lexical []

words	The	interaction	enhances	the	efficiency	by	which	ENTITY	phosphorylates	ENTITY	on	its	key	regulatory	site	,	ENTITY	Furthermore	,	the	interaction	is	reduced	by	a	naturally	occurring	R125W	mutation	in	the	PTB1	domain	of	TBC1D1	,	previously	found	to	be	associated	with	severe	familial	obesity	in	females	,	with	a	concomitant	reduction	in	ENTITY	phosphorylation	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=12410840 label=1.0,1.0 duid=RL:ACAW

dependency ['mark', 'amod', 'nsubj', 'advcl', 'case', 'nmod', 'NA', 'det', 'amod', 'compound', 'compound', 'nsubjpass', 'auxpass', 'root', 'NA', 'cc', 'det', 'nsubj', 'conj', 'nummod', 'amod', 'compound', 'dobj', 'dep', 'cc', 'dep', 'NA', 'dep', 'dep', 'case', 'nmod', 'cc', 'nmod', 'NA', 'mark', 'advcl', 'amod', 'dobj', 'case', 'amod', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylates', 'proteins', 'ENTITY']
shortest_path_tag ['nsubj', 'conj', 'dobj', 'dep']
lexical []

words	Once	haploid	cells	respond	to	pheromone	,	the	mating-specific	signal	transduction	pathway	is	activated	,	and	the	ENTITY	phosphorylates	two	specific	repressor	proteins	ENTITY	and	ENTITY	(	also	known	as	Dig1	and	Dig2	)	to	promote	Ste12-dependent	transcription	of	mating-specific	genes	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=8901561 label=1.0,0.0 duid=RL:gTtU

dependency ['nsubj', 'case', 'nmod', 'case', 'nmod', 'root', 'det', 'dobj', 'case', 'det', 'amod', 'compound', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'Phosphorylation', 'ENTITY']
shortest_path_tag ['nmod', 'nsubj', 'nmod']
lexical []

words	Phosphorylation	of	ENTITY	by	ENTITY	inhibits	the	activity	of	the	minichromosome	maintenance	complex	.
is_protein	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=18514071 label=1.0,0.0 duid=RL:Czeb

dependency ['advcl', 'amod', 'amod', 'dobj', 'NA', 'nsubjpass', 'auxpass', 'root', 'mark', 'nsubjpass', 'cc', 'conj', 'case', 'det', 'compound', 'nmod', 'case', 'nmod', 'auxpass', 'ccomp', 'case', 'nmod', 'compound', 'advmod', 'advmod', 'compound', 'advmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylated', 'ENTITY', 'domain', 'ENTITY']
shortest_path_tag ['nmod', 'ccomp', 'nsubjpass', 'nmod', 'nmod']
lexical []

words	Using	classical	biochemical	approaches	,	it	was	established	that	ENTITY	and	ENTITY	within	the	RA	domain	of	ENTITY	are	phosphorylated	by	ENTITY	in	vitro	and	in	vivo	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=21284977 label=0.0,1.0 duid=RL:4SWs

dependency ['nsubj', 'cc', 'amod', 'conj', 'case', 'nmod', 'root', 'dobj', 'NA']
shortest_path_text ['ENTITY', 'ENTITY']
shortest_path_tag ['nsubj', 'nmod']
lexical []

words	ENTITY	-	dependent	phosphorylation	of	ENTITY	induces	autophagy	.
is_protein	1.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0
is_kinase	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	1.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0

docId=15069075 label=1.0,1.0 duid=RL:nKaK

dependency ['mark', 'advcl', 'det', 'amod', 'dobj', 'case', 'det', 'compound', 'nmod', 'NA', 'nsubj', 'root', 'mark', 'ccomp', 'det', 'compound', 'compound', 'dobj', 'case', 'nmod', 'cc', 'mark', 'ccomp', 'nmod', 'amod', 'dobj', 'NA']
shortest_path_text ['ENTITY', 'sites', 'ENTITY']
shortest_path_tag ['compound', 'dobj', 'nmod']
lexical []

words	To	clarify	the	molecular	mechanism	of	this	feedback	loop	,	we	sought	to	identify	the	ENTITY	phosphorylation	sites	of	ENTITY	and	to	investigate	their	biological	significance	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=11278488 label=1.0,1.0 duid=RL:EAYc

dependency ['compound', 'nsubj', 'case', 'amod', 'compound', 'nmod', 'root', 'mark', 'nsubj', 'aux', 'ccomp', 'nmod', 'cc', 'ccomp', 'det', 'compound', 'dobj', 'mark', 'nsubj', 'advcl', 'compound', 'dobj', 'case', 'nmod', 'case', 'amod', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylate', 'mutant', 'ENTITY']
shortest_path_tag ['nsubj', 'ccomp', 'dobj', 'compound']
lexical []

words	Co-expression	studies	in	human	293T	cells	showed	that	ENTITY	could	associate	with	and	phosphorylate	a	ENTITY	mutant	at	ENTITY	promoting	Grb2	binding	to	FAK	in	suspended	cells	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=11533174 label=1.0,0.0 duid=RL:sHEt

dependency ['case', 'nmod', 'NA', 'nummod', 'amod', 'nsubjpass', 'case', 'compound', 'nmod', 'NA', 'advmod', 'NA', 'nmod', 'compound', 'appos', 'cc', 'nmod', 'appos', 'cc', 'amod', 'appos', 'case', 'det', 'nmod', 'NA', 'auxpass', 'advmod', 'root', 'NA']
shortest_path_text ['ENTITY', 'exclusion', 'features', 'ENTITY']
shortest_path_tag ['nmod', 'appos', 'nsubjpass', 'nmod']
lexical []

words	As	such	,	two	unusual	features	of	VZV	ENTITY	,	namely	,	its	virion	inclusion	and	its	phosphorylation	and	nuclear	exclusion	by	the	ENTITY	,	are	functionally	linked	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0

docId=10196136 label=1.0,1.0 duid=RL:Smky

dependency ['mark', 'nsubj', 'advmod', 'advcl', 'dobj', 'case', 'det', 'nmod', 'NA', 'det', 'amod', 'nsubjpass', 'case', 'det', 'nmod', 'case', 'nmod', 'auxpass', 'root', 'NA']
shortest_path_text ['ENTITY', 'phosphorylates', 'ENTITY']
shortest_path_tag ['nsubj', 'advcl', 'dobj']
lexical []

words	Because	ENTITY	also	phosphorylates	ENTITY	in	the	complex	,	the	physiological	significance	of	the	phosphorylation	of	ENTITY	was	examined	.
is_protein	0.0	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=10196136 label=0.0,0.0 duid=RL:7vNk

dependency ['amod', 'nsubj', 'root', 'mark', 'det', 'amod', 'nsubj', 'case', 'nmod', 'cop', 'advmod', 'ccomp', 'case', 'det', 'amod', 'nmod', 'cc', 'mark', 'det', 'compound', 'nmod', 'NA', 'case', 'ref', 'det', 'amod', 'compound', 'nsubjpass', 'case', 'nmod', 'auxpass', 'acl', 'NA', 'ccomp', 'det', 'amod', 'dobj', 'case', 'amod', 'compound', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'sites', 'mutated', 'mutant', 'exhibited', 'stable', 'form', 'ENTITY']
shortest_path_tag ['nmod', 'nsubjpass', 'acl', 'nmod', 'ccomp', 'ccomp', 'nsubj', 'nmod']
lexical []

words	Pulse-chase	analyses	showed	that	the	phosphorylated	form	of	ENTITY	was	more	stable	than	the	unphosphorylated	form	and	that	an	Axin	mutant	,	in	which	the	possible	phosphorylation	sites	for	ENTITY	were	mutated	,	exhibited	a	shorter	half-life	than	wild	type	Axin	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=10196136 label=1.0,0.0 duid=RL:9fvj

dependency ['nsubjpass', 'NA', 'ref', 'auxpass', 'advmod', 'acl', 'mark', 'xcomp', 'advmod', 'case', 'nmod', 'NA', 'root', 'det', 'dobj', 'case', 'nmod', 'case', 'nmod', 'compound', 'advmod', 'NA']
shortest_path_text ['ENTITY', 'inhibited', 'phosphorylation', 'ENTITY']
shortest_path_tag ['nmod', 'root', 'dobj', 'nmod']
lexical []

words	Dvl-1	,	which	was	genetically	shown	to	function	upstream	of	GSK-3beta	,	inhibited	the	phosphorylation	of	ENTITY	by	ENTITY	in	vitro	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0

docId=17283176 label=1.0,1.0 duid=RL:qMpS

dependency ['mark', 'advcl', 'compound', 'advmod', 'case', 'compound', 'NA', 'compound', 'NA', 'amod', 'nmod', 'advmod', 'compound', 'advmod', 'case', 'det', 'compound', 'compound', 'nmod', 'NA', 'nsubj', 'root', 'dobj', 'case', 'compound', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylated', 'ENTITY']
shortest_path_tag ['nsubj', 'root', 'dobj']
lexical []

words	As	observed	in	vivo	using	PKC	(	epsilon	)	knockout	mice	and	in	vitro	in	an	immunocomplex	kinase	assay	,	ENTITY	phosphorylated	ENTITY	at	ENTITY	residue	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0

docId=27061942 label=1.0,1.0 duid=RL:RaAq

dependency ['case', 'det', 'compound', 'compound', 'nmod', 'NA', 'nsubj', 'root', 'dobj', 'cc', 'conj', 'det', 'dobj', 'case', 'compound', 'nmod', 'case', 'det', 'compound', 'nmod', 'case', 'det', 'compound', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylates', 'ENTITY']
shortest_path_tag ['nsubj', 'root', 'dobj']
lexical []

words	In	a	yeast	cell	cycle	,	ENTITY	phosphorylates	ENTITY	and	controls	the	timing	of	polarisome	translocation	from	the	bud	tip	to	the	bud	neck	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=2543300 label=0.0,0.0 duid=RL:8ixG

dependency ['case', 'mwe', 'det', 'nmod', 'NA', 'det', 'amod', 'nsubjpass', 'auxpass', 'root', 'case', 'det', 'amod', 'nmod', 'case', 'amod', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'subunit', 'phosphorylated', 'ENTITY']
shortest_path_tag ['nmod', 'nmod', 'root', 'nsubjpass']
lexical []

words	According	to	this	technique	,	the	immunoprecipitated	ENTITY	was	phosphorylated	with	the	catalytic	subunit	of	pure	ENTITY	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0

docId=1661148 label=0.0,1.0 duid=RL:ytAw

dependency ['advmod', 'nsubjpass', 'case', 'nmod', 'cc', 'nmod', 'case', 'det', 'compound', 'nmod', 'auxpass', 'advmod', 'advcl', 'NA', 'amod', 'amod', 'nsubjpass', 'auxpass', 'root', 'NA', 'nsubj', 'parataxis', 'compound', 'cc', 'amod', 'compound', 'conj', 'dobj', 'case', 'cc', 'nmod', 'cc', 'nmod', 'advmod', 'NA']
shortest_path_text ['ENTITY', 'ENTITY']
shortest_path_tag ['nmod', 'nmod']
lexical []

words	When	effects	of	polylysine	and	polyarginine	on	both	receptor	TPKs	were	closely	compared	,	subtle	qualitative	differences	were	found	:	Polylysine	stimulated	autophosphorylation	and	exogenous	substrate	phosphorylation	activities	of	both	ENTITY	and	ENTITY	similarly	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0

docId=1661148 label=0.0,0.0 duid=RL:Gcj4

dependency ['case', 'nmod', 'NA', 'det', 'nsubj', 'NA', 'appos', 'NA', 'root', 'det', 'dobj', 'case', 'det', 'nmod', 'advmod', 'amod', 'case', 'nmod', 'NA', 'nsubj', 'parataxis', 'compound', 'dobj', 'case', 'det', 'amod', 'nmod', 'mark', 'nsubj', 'advcl', 'mark', 'nsubj', 'advcl', 'det', 'advmod', 'amod', 'dobj', 'case', 'det', 'compound', 'nmod', 'cc', 'mwe', 'mwe', 'det', 'amod', 'amod', 'compound', 'dobj', 'case', 'det', 'nummod', 'compound', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'autophosphorylation', 'effect', 'had', 'did', 'stimulated', 'affected', 'ENTITY']
shortest_path_tag ['compound', 'nmod', 'dobj', 'advcl', 'advcl', 'parataxis', 'root', 'dobj']
lexical []

words	In	contrast	,	another	polycation	,	polyarginine	,	affected	both	ENTITY	in	a	manner	quite	different	from	polylysine	:	Polyarginine	stimulated	ENTITY	autophosphorylation	to	a	greater	extent	than	polylysine	did	while	it	had	a	very	small	effect	on	the	ENTITY	autophosphorylation	as	well	as	the	exogenous	substrate	phosphorylation	activities	of	the	two	receptor	TPKs	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=9655197 label=1.0,0.0 duid=RL:RTya

dependency ['det', 'nsubj', 'cop', 'root', 'case', 'nmod', 'case', 'nmod', 'acl', 'case', 'nmod', 'NA', 'nmod', 'cc', 'compound', 'nummod', 'nmod', 'NA', 'mark', 'nsubj', 'case', 'det', 'nmod', 'case', 'compound', 'nmod', 'nummod', 'cc', 'amod', 'compound', 'nmod', 'nummod', 'advcl', 'case', 'det', 'amod', 'nmod', 'case', 'det', 'compound', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylated', 'ENTITY']
shortest_path_tag ['nmod', 'acl', 'nmod']
lexical []

words	This	activity	is	higher	than	that	of	ENTITY	phosphorylated	by	ENTITY	,	ENTITY	or	cdc	2	kinase	,	whereas	phosphorylation	of	the	protein	with	casein	kinase	2	or	glycogen	synthase	kinase	3	resulted	in	a	slight	increase	of	the	depolymerizing	activity	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=12149229 label=1.0,0.0 duid=RL:fGU9

dependency ['nsubj', 'case', 'amod', 'amod', 'nmod', 'NA', 'appos', 'NA', 'NA', 'amod', 'compound', 'nmod', 'NA', 'appos', 'NA', 'NA', 'cc', 'nmod', 'root', 'det', 'dobj', 'case', 'nmod', 'cc', 'nmod', 'case', 'nmod', 'case', 'det', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'activation', 'SAPK/JNK', 'ENTITY']
shortest_path_tag ['nmod', 'dobj', 'nmod', 'nmod']
lexical []

words	Analysis	of	extracellular	signal-regulated	kinase-1/2	(	ERK1/2	)	,	stress-activated	protein/Jun	kinase	(	SAPK/JNK	)	,	and	p38	demonstrates	the	activation	of	SAPK/JNK	and	phosphorylation	of	ENTITY	by	all	ENTITY	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	1.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	1.0	0.0

docId=12149229 label=1.0,1.0 duid=RL:ng42

dependency ['nsubj', 'NA', 'nummod', 'NA', 'cc', 'conj', 'NA', 'nummod', 'NA', 'advmod', 'root', 'dobj', 'NA', 'dep', 'nsubj', 'NA', 'nummod', 'NA', 'parataxis', 'dobj', 'case', 'amod', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylate', 'ENTITY']
shortest_path_tag ['conj', 'root', 'dobj']
lexical []

words	TEL-JAK2	(	5-12	)	and	ENTITY	(	5-19	)	preferentially	phosphorylate	ENTITY	,	whereas	ENTITY	(	4-17	)	phosphorylated	ENTITY	at	lower	levels	.
is_protein	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=12149229 label=1.0,1.0 duid=RL:JDiP

dependency ['nsubj', 'NA', 'nummod', 'NA', 'cc', 'conj', 'NA', 'nummod', 'NA', 'advmod', 'root', 'dobj', 'NA', 'dep', 'nsubj', 'NA', 'nummod', 'NA', 'parataxis', 'dobj', 'case', 'amod', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylated', 'ENTITY']
shortest_path_tag ['nsubj', 'parataxis', 'dobj']
lexical []

words	TEL-JAK2	(	5-12	)	and	ENTITY	(	5-19	)	preferentially	phosphorylate	ENTITY	,	whereas	ENTITY	(	4-17	)	phosphorylated	ENTITY	at	lower	levels	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0

docId=8657103 label=1.0,1.0 duid=RL:o34H

dependency ['det', 'nsubj', 'case', 'nmod', 'mark', 'acl', 'dobj', 'root', 'compound', 'compound', 'dobj', 'NA', 'mark', 'nsubj', 'cop', 'advmod', 'advcl', 'NA']
shortest_path_text ['ENTITY', 'ability', 'phosphorylate', 'ENTITY']
shortest_path_tag ['nmod', 'nsubj', 'acl', 'dobj']
lexical []

words	The	ability	of	ENTITY	to	phosphorylate	ENTITY	required	antigen	receptor	ligation	,	while	Lyn	was	constitutively	active	.
is_protein	0.0	0.0	0.0	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=8657103 label=0.0,1.0 duid=RL:5Ris

dependency ['nsubj', 'case', 'nmod', 'cc', 'nmod', 'case', 'det', 'compound', 'nmod', 'case', 'nmod', 'case', 'nmod', 'advmod', 'root', 'det', 'compound', 'dobj', 'cc', 'det', 'dobj', 'case', 'det', 'amod', 'nmod', 'case', 'compound', 'compound', 'NA', 'nmod', 'NA', 'compound', 'advmod', 'NA', 'nsubj', 'advmod', 'parataxis', 'mark', 'xcomp', 'compound', 'dobj', 'case', 'nmod', 'compound', 'advmod', 'NA']
shortest_path_text ['ENTITY', 'site', 'Substitution', 'reduced', 'failed', 'induce', 'phosphorylation', 'ENTITY']
shortest_path_tag ['nmod', 'nmod', 'nsubj', 'root', 'parataxis', 'xcomp', 'dobj', 'nmod']
lexical []

words	Substitution	of	Tyr-525	and	Tyr-526	at	the	autophosphorylation	site	of	ENTITY	in	mCD8-Syk	substantially	reduced	the	kinase	activity	and	the	binding	of	this	variant	chimera	to	PLC-gamma1	SH2	(	C	)	in	vitro	;	it	also	failed	to	induce	ENTITY	phosphorylation	of	ENTITY	in	vivo	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0

docId=19995915 label=0.0,1.0 duid=RL:98Zm

dependency ['case', 'nmod', 'NA', 'nsubjpass', 'case', 'dep', 'nmod', 'cc', 'nmod', 'auxpass', 'root', 'mark', 'auxpass', 'xcomp', 'case', 'det', 'nmod', 'NA', 'advcl', 'mark', 'nsubj', 'cc', 'amod', 'conj', 'case', 'nmod', 'ccomp', 'compound', 'cc', 'conj', 'dobj', 'NA']
shortest_path_text ['ENTITY', 'ENTITY']
shortest_path_tag ['nsubj', 'nmod']
lexical []

words	In	addition	,	phosphorylation	of	the	ENTITY	and	ENTITY	was	found	to	be	increased	in	these	cells	,	indicating	that	ENTITY	-	mediated	phosphorylation	of	ENTITY	inhibits	mTORC2	and	Akt	signaling	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=1654434 label=1.0,1.0 duid=RL:Zr7g

dependency ['nsubj', 'advmod', 'root', 'dobj', 'ref', 'advmod', 'acl', 'dobj', 'cc', 'amod', 'amod', 'amod', 'NA', 'amod', 'dobj', 'compound', 'advmod', 'NA', 'compound', 'dep', 'NA', 'appos', 'NA']
shortest_path_text ['ENTITY', 'phosphorylates', 'ENTITY']
shortest_path_tag ['dobj', 'acl', 'dobj']
lexical []

words	We	recently	described	ENTITY	that	efficiently	phosphorylates	ENTITY	and	several	other	nuclear	,	DNA-binding	proteins	in	vitro	(	S.P.	Lees-Miller	,	Y.-R	.
is_protein	0.0	0.0	0.0	1.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	1.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=21619587 label=1.0,1.0 duid=RL:EDGa

dependency ['mark', 'amod', 'nsubj', 'aux', 'advcl', 'mark', 'compound', 'compound', 'nsubjpass', 'NA', 'appos', 'NA', 'aux', 'auxpass', 'ccomp', 'NA', 'det', 'amod', 'nsubj', 'case', 'nmod', 'case', 'nmod', 'nmod', 'mark', 'acl', 'dobj', 'root', 'xcomp', 'NA']
shortest_path_text ['ENTITY', 'contribution', 'ability', 'phosphorylate', 'ENTITY']
shortest_path_tag ['nmod', 'nsubj', 'nmod', 'acl', 'dobj']
lexical []

words	Although	recent	studies	have	suggested	that	protein	kinase	C	(	PKC	)	may	be	involved	,	the	individual	contribution	of	ENTITY	in	their	ability	to	phosphorylate	ENTITY	remains	unknown	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0

docId=21619587 label=1.0,1.0 duid=RL:VrmV

dependency ['advcl', 'dobj', 'case', 'det', 'compound', 'nmod', 'NA', 'nsubj', 'advmod', 'root', 'mark', 'nsubj', 'advmod', 'ccomp', 'nmod', 'cc', 'ccomp', 'dobj', 'NA']
shortest_path_text ['ENTITY', 'phosphorylates', 'ENTITY']
shortest_path_tag ['nsubj', 'ccomp', 'dobj']
lexical []

words	Using	PKCζ	as	a	prototype	model	,	we	also	found	that	ENTITY	physically	interacts	with	and	phosphorylates	ENTITY	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0

docId=21619587 label=1.0,0.0 duid=RL:Z6FR

dependency ['advmod', 'NA', 'amod', 'dep', 'nsubj', 'case', 'nmod', 'case', 'nmod', 'root', 'nmod', 'compound', 'dobj', 'NA']
shortest_path_text ['ENTITY', 'phosphorylation', 'ENTITY']
shortest_path_tag ['nmod', 'nsubj', 'nmod']
lexical []

words	Moreover	,	in	vitro	phosphorylation	of	ENTITY	by	ENTITY	reduced	its	methytransferase	activity	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0

docId=2590197 label=1.0,0.0 duid=RL:wpp7

dependency ['nsubj', 'cop', 'det', 'amod', 'root', 'case', 'det', 'nmod', 'case', 'nmod', 'case', 'advmod', 'amod', 'nmod', 'NA', 'dep', 'NA', 'nummod', 'dep', 'NA', 'NA']
shortest_path_text ['ENTITY', 'phosphorylation', 'ENTITY']
shortest_path_tag ['nmod', 'nmod', 'nmod']
lexical []

words	D4CC	is	a	poor	inhibitor	of	the	phosphorylation	of	ENTITY	by	partially	purified	ENTITY	(	Ki	:	612	microM	)	.
is_protein	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=24284075 label=1.0,1.0 duid=RL:q5RZ

dependency ['advmod', 'amod', 'nsubj', 'NA', 'cc', 'cc', 'amod', 'conj', 'NA', 'root', 'dobj', 'case', 'nmod', 'NA', 'nmod', 'cc', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylates', 'ENTITY']
shortest_path_tag ['nsubj', 'root', 'dobj']
lexical []

words	Interestingly	oncogenic	ENTITY	,	but	not	wild-type	c-Kit	,	phosphorylates	ENTITY	on	ENTITYENTITYENTITYENTITY	,	ENTITY	and	ENTITY	.
is_protein	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0

docId=12167631 label=1.0,1.0 duid=RL:SJ2b

dependency ['compound', 'nsubj', 'case', 'nmod', 'root', 'compound', 'dobj', 'case', 'amod', 'compound', 'nmod', 'NA']
shortest_path_text ['ENTITY', 'phosphorylation', 'ENTITY']
shortest_path_tag ['compound', 'nsubj', 'nmod']
lexical []

words	ENTITY	phosphorylation	of	ENTITY	increases	channel	activity	in	planar	lipid	bilayers	.
is_protein	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_substrate	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_kinase	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
is_gene
is_mirna
is_arg	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0